STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107094039Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes. (649 aa)    
Predicted Functional Partners:
LOC107082259
Microfibril associated protein 5.
   
 
 0.547
ENSCVAP00000004873
Uncharacterized protein.
 
  
  0.516
LOC107103464
Tenascin C.
   
 0.508
MFAP2
Microfibril associated protein 2.
   
 0.508
rassf8
Ras association domain family member 8a.
      
 0.491
hspg2
Heparan sulfate proteoglycan 2.
   
 0.456
frem2
FRAS1 related extracellular matrix 2a.
    
 0.447
LOC107084203
Vitronectin b.
    
 0.443
vtn
Vitronectin a.
    
 0.443
arid4b
Translocase of outer mitochondrial membrane 20.
    
 0.416
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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