STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc134Si:dkey-167k11.5. (257 aa)    
Predicted Functional Partners:
LOC107105240
Uncharacterized protein.
    
 
 0.672
LOC107096970
Amyloid beta precursor protein binding family A member 3.
      
 0.578
ENSCVAP00000012513
MHC_I-like_Ag-recog domain-containing protein; Belongs to the MHC class I family.
      
 0.489
ENSCVAP00000027918
Ig-like domain-containing protein.
      
 0.482
tmed2
Transmembrane p24 trafficking protein 2.
   
 
 0.481
zbtb20
Zinc finger and BTB domain containing 20.
    
 0.426
ENSCVAP00000028748
Uncharacterized protein.
    
 
 0.407
xpo1
Exportin 1 (CRM1 homolog, yeast) a.
     
 0.404
LOC107081758
Exportin 1 (CRM1 homolog, yeast) b.
     
 0.404
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.