STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107096891Si:dkeyp-118h3.6. (192 aa)    
Predicted Functional Partners:
rtcb
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
    
 0.925
fam98b
Family with sequence similarity 98 member B.
   
 0.914
rtraf
RNA transcription, translation and transport factor.
    
 0.897
ddx1
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
    
 0.886
fam98a
Family with sequence similarity 98 member A.
      
 0.611
zbtb8os
Zinc finger and BTB domain containing 8 opposite strand.
     
 0.545
ND4
NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
    
 
 0.492
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.482
rps17
Uncharacterized protein.
    
 
 0.465
mrps11
Mitochondrial ribosomal protein S11; Belongs to the universal ribosomal protein uS11 family.
   
 
 0.453
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.