STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107099166RNA binding fox-1 homolog 2. (219 aa)    
Predicted Functional Partners:
CELF2
Cugbp, Elav-like family member 2.
   
 
 0.687
RBPMS
RNA binding protein, mRNA processing factor.
   
 
 0.577
LOC107099240
Methyl CpG binding protein 2.
     
 0.548
RBM38
RNA binding motif protein 38.
   
 
 0.539
LOC107082323
RNA binding motif protein 24b.
   
 
 0.539
LOC107090257
RRM domain-containing protein.
   
 
 0.539
LOC107092442
RNA binding motif protein 24a.
   
 
 0.539
QKI
QKI, KH domain containing, RNA binding 2.
   
 
 0.506
LOC107094928
QKI, KH domain containing, RNA binding a.
   
 
 0.506
snrpc
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. SNRPC/U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region. Belongs to the U1 [...]
    
 
 0.431
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.