STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107102049SH3 and PX domains 2Aa. (1150 aa)    
Predicted Functional Partners:
RHOT1
Ras homolog family member T1.
    
 0.710
mnd1
Meiotic nuclear division protein 1 homolog; Required for proper homologous chromosome pairing and efficient cross-over and intragenic recombination during meiosis. Belongs to the MND1 family.
    
 
 0.667
LOC107089054
Zgc:66447.
    
 
 0.666
rnf6
Ring finger protein (C3H2C3 type) 6.
   
  
 0.665
clvs2
Clavesin 2.
      
 0.664
LOC107084894
Neutrophil cytosolic factor 2.
   
 0.550
LOC107102272
NADPH oxidase activator 1.
   
 0.550
LOC107104017
Muskelin 1, intracellular mediator containing kelch motifs.
      
 0.542
ENSCVAP00000006548
Uncharacterized protein.
      
 0.540
LOC107095882
SEC63 homolog, protein translocation regulator.
      
 0.540
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.