STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107098421Contactin 1b. (1040 aa)    
Predicted Functional Partners:
LOC107083890
Uncharacterized protein.
    
0.954
NRCAM
Neuronal cell adhesion molecule.
    
0.946
LOC107098116
Uncharacterized protein.
  
  
 
0.901
cntnap1
Contactin associated protein 1.
   
 0.872
ptprg
Carbonic anhydrase XVI b.
    
 0.589
ENSCVAP00000024411
Uncharacterized protein.
    
 0.589
LOC107101175
Uncharacterized protein.
    
0.555
APP
Amyloid beta precursor protein.
   
 
 0.532
LOC107104503
Amyloid beta (A4) precursor protein b.
   
 
 0.532
LOC107098426
Neuronal cell adhesion molecule a.
    
0.485
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.