STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
erp27Uncharacterized protein. (254 aa)    
Predicted Functional Partners:
gak
Cyclin G associated kinase.
    
 0.722
clstn3
Calsyntenin 3.
      
 0.629
LOC107083169
Phosphodiesterase 6G, cGMP-specific, rod, gamma, paralog a.
      
 0.628
prdx5
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.
   
 0.625
hspa5
Heat shock protein 5; Belongs to the heat shock protein 70 family.
   
 0.620
LOC107080670
Calreticulin.
   
 0.607
LOC107101296
Calreticulin.
   
 0.607
gsr
Glutathione reductase; Maintains high levels of reduced glutathione in the cytosol. Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.
  
 0.596
ero1a
Endoplasmic reticulum oxidoreductase alpha.
   
 0.587
ero1b
Endoplasmic reticulum oxidoreductase beta.
   
 0.587
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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