STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000003344Uncharacterized protein. (265 aa)    
Predicted Functional Partners:
LOC107093746
Paralemmin 1b.
      
 0.672
nr1h3
Nuclear receptor subfamily 1, group H, member 3.
    
 0.627
ENSCVAP00000003247
ATP-binding cassette, sub-family A (ABC1), member 4a.
 
      0.605
LOC107082965
Uncharacterized protein.
   
 0.551
LOC107082973
Uncharacterized protein.
   
 0.551
ENSCVAP00000019260
ABC transporter domain-containing protein.
 
      0.473
LOC107086584
Cytochrome c oxidase assembly homolog 15 (yeast).
    
 0.419
apoa4
Apolipoprotein A-Ib.
     
 0.410
ENSCVAP00000019270
ABC transporter domain-containing protein.
 
      0.401
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.