STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdc20Cell division cycle 20 homolog. (499 aa)    
Predicted Functional Partners:
LOC107093534
Uncharacterized protein.
   
 0.999
mad2l1
MAD2 mitotic arrest deficient-like 1 (yeast).
   
 0.997
fbxo5
F-box protein 5.
   
 0.997
bub1b
BUB1 mitotic checkpoint serine/threonine kinase Bb.
   
 0.997
ccnb1
Cyclin B1; Belongs to the cyclin family.
   
 0.995
cdc27
Cell division cycle 27.
   
 0.995
nek2
NIMA-related kinase 2.
   
 0.994
cdc23
CDC23 (cell division cycle 23, yeast, homolog).
   
 0.993
ube2c
Ubiquitin-conjugating enzyme E2C; Belongs to the ubiquitin-conjugating enzyme family.
   
 0.993
LOC107085054
Cyclin B2; Belongs to the cyclin family.
   
 0.993
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.