STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
shld2Si:ch211-134m17.9. (772 aa)    
Predicted Functional Partners:
mad2l2
Mitotic arrest deficient 2 like 2.
    
 
 0.959
LOC107097796
Uncharacterized protein.
    
 
 0.928
paxx
Uncharacterized protein.
  
   
 0.597
rif1
Replication timing regulatory factor 1.
    
 
 0.545
rev3l
REV3 like, DNA directed polymerase zeta catalytic subunit.
      
 0.483
kiz
Kizuna centrosomal protein.
      
 0.478
tp53bp1
Tumor protein p53 binding protein, 1.
    
 
 0.473
rfwd3
Ring finger and WD repeat domain 3.
      
 0.410
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.