STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107084920Rho GTPase activating protein 29a. (1355 aa)    
Predicted Functional Partners:
LOC107082156
Ras interacting protein 1.
    
 0.528
CDC42
Cell division cycle 42.
   
 0.499
LOC107085118
Uncharacterized protein.
   
 0.499
LOC107082256
Uncharacterized protein.
   
 0.437
LOC107086129
Uncharacterized protein.
   
 0.437
LOC107080846
Uncharacterized protein.
     
0.432
rac2
Uncharacterized protein.
   
 0.415
LOC107092536
Rac family small GTPase 1b.
   
 0.415
LOC107087645
Rac family small GTPase 3b.
   
 0.415
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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