STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SPHK1Sphingosine kinase 1. (356 aa)    
Predicted Functional Partners:
sgpl1
Sphingosine-1-phosphate lyase 1.
  
 0.688
tcp1
T-complex 1.
    
 0.627
cct6a
Chaperonin containing TCP1, subunit 6A (zeta 1).
    
 0.627
cct5
Chaperonin containing TCP1, subunit 5 (epsilon).
    
 0.627
cct7
T-complex protein 1 subunit eta; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
    
 0.627
cct4
T-complex protein 1 subunit delta.
    
 0.627
cct2
Chaperonin containing TCP1, subunit 2 (beta).
    
 0.627
cct3
T-complex protein 1 subunit gamma.
    
 0.627
asah2
Neutral ceramidase.
    
 0.565
timm10
Translocase of inner mitochondrial membrane 10 homolog (yeast).
    
 
 0.554
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.