tra2b protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

tra2b

Transformer 2 beta homolog. (275 aa)

Predicted Functional Partners:

srsf2

0.883

SRSF3

0.882

LOC107101924

0.882

LOC107089377

0.857

LOC107090357

0.857

LOC107092507

0.854

srsf7

0.854

srsf10

0.822

LOC107091295

0.807

ENSCVAP00000000909

0.797

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000000909	LOC107089377	ENSCVAP00000000909	ENSCVAP00000004170	Serine and arginine rich splicing factor 6.	Uncharacterized protein.	0.673
ENSCVAP00000000909	LOC107090357	ENSCVAP00000000909	ENSCVAP00000030220	Serine and arginine rich splicing factor 6.	Serine and arginine rich splicing factor 1a.	0.664
ENSCVAP00000000909	LOC107091295	ENSCVAP00000000909	ENSCVAP00000031841	Serine and arginine rich splicing factor 6.	Serine and arginine rich splicing factor 9.	0.686
ENSCVAP00000000909	LOC107092507	ENSCVAP00000000909	ENSCVAP00000017056	Serine and arginine rich splicing factor 6.	Serine and arginine rich splicing factor 7a.	0.663
ENSCVAP00000000909	LOC107101924	ENSCVAP00000000909	ENSCVAP00000008105	Serine and arginine rich splicing factor 6.	RRM domain-containing protein.	0.732
ENSCVAP00000000909	SRSF3	ENSCVAP00000000909	ENSCVAP00000002730	Serine and arginine rich splicing factor 6.	Serine and arginine rich splicing factor 3.	0.732
ENSCVAP00000000909	srsf10	ENSCVAP00000000909	ENSCVAP00000016341	Serine and arginine rich splicing factor 6.	Serine and arginine rich splicing factor 10.	0.697
ENSCVAP00000000909	srsf2	ENSCVAP00000000909	ENSCVAP00000032199	Serine and arginine rich splicing factor 6.	Serine and arginine rich splicing factor 2a.	0.890
ENSCVAP00000000909	srsf7	ENSCVAP00000000909	ENSCVAP00000023431	Serine and arginine rich splicing factor 6.	Serine and arginine rich splicing factor 7b.	0.663
ENSCVAP00000000909	tra2b	ENSCVAP00000000909	ENSCVAP00000003418	Serine and arginine rich splicing factor 6.	Transformer 2 beta homolog.	0.797
LOC107089377	ENSCVAP00000000909	ENSCVAP00000004170	ENSCVAP00000000909	Uncharacterized protein.	Serine and arginine rich splicing factor 6.	0.673
LOC107089377	LOC107091295	ENSCVAP00000004170	ENSCVAP00000031841	Uncharacterized protein.	Serine and arginine rich splicing factor 9.	0.847
LOC107089377	LOC107092507	ENSCVAP00000004170	ENSCVAP00000017056	Uncharacterized protein.	Serine and arginine rich splicing factor 7a.	0.919
LOC107089377	LOC107101924	ENSCVAP00000004170	ENSCVAP00000008105	Uncharacterized protein.	RRM domain-containing protein.	0.904
LOC107089377	SRSF3	ENSCVAP00000004170	ENSCVAP00000002730	Uncharacterized protein.	Serine and arginine rich splicing factor 3.	0.904
LOC107089377	srsf10	ENSCVAP00000004170	ENSCVAP00000016341	Uncharacterized protein.	Serine and arginine rich splicing factor 10.	0.964
LOC107089377	srsf2	ENSCVAP00000004170	ENSCVAP00000032199	Uncharacterized protein.	Serine and arginine rich splicing factor 2a.	0.928
LOC107089377	srsf7	ENSCVAP00000004170	ENSCVAP00000023431	Uncharacterized protein.	Serine and arginine rich splicing factor 7b.	0.919
LOC107089377	tra2b	ENSCVAP00000004170	ENSCVAP00000003418	Uncharacterized protein.	Transformer 2 beta homolog.	0.857
LOC107090357	ENSCVAP00000000909	ENSCVAP00000030220	ENSCVAP00000000909	Serine and arginine rich splicing factor 1a.	Serine and arginine rich splicing factor 6.	0.664