LOC107103244 protein (Cyprinodon variegatus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC107103244

ORM1-like protein; Negative regulator of sphingolipid synthesis. (153 aa)

Predicted Functional Partners:

sptlc1

0.846

sptssa

0.818

sptssb

0.598

sptlc3

0.594

ism1

0.594

LOC107097711

0.594

ism2

0.594

ENSCVAP00000014659

0.594

gcat

0.452

LOC107087501

0.452

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000014659	LOC107103244	ENSCVAP00000014659	ENSCVAP00000003465	Uncharacterized protein.	ORM1-like protein; Negative regulator of sphingolipid synthesis.	0.594
ENSCVAP00000014659	sptlc1	ENSCVAP00000014659	ENSCVAP00000012135	Uncharacterized protein.	Serine palmitoyltransferase, long chain base subunit 1.	0.912
ENSCVAP00000014659	sptssa	ENSCVAP00000014659	ENSCVAP00000014917	Uncharacterized protein.	Serine palmitoyltransferase, small subunit A.	0.754
ENSCVAP00000014659	sptssb	ENSCVAP00000014659	ENSCVAP00000003457	Uncharacterized protein.	Serine palmitoyltransferase, small subunit B.	0.611
LOC107087501	LOC107103244	ENSCVAP00000027521	ENSCVAP00000003465	5-aminolevulinate synthase.	ORM1-like protein; Negative regulator of sphingolipid synthesis.	0.452
LOC107087501	gcat	ENSCVAP00000027521	ENSCVAP00000001179	5-aminolevulinate synthase.	Glycine C-acetyltransferase.	0.908
LOC107087501	sptssa	ENSCVAP00000027521	ENSCVAP00000014917	5-aminolevulinate synthase.	Serine palmitoyltransferase, small subunit A.	0.545
LOC107087501	sptssb	ENSCVAP00000027521	ENSCVAP00000003457	5-aminolevulinate synthase.	Serine palmitoyltransferase, small subunit B.	0.525
LOC107097711	LOC107103244	ENSCVAP00000010101	ENSCVAP00000003465	Serine palmitoyltransferase, long chain base subunit 2b.	ORM1-like protein; Negative regulator of sphingolipid synthesis.	0.594
LOC107097711	sptlc1	ENSCVAP00000010101	ENSCVAP00000012135	Serine palmitoyltransferase, long chain base subunit 2b.	Serine palmitoyltransferase, long chain base subunit 1.	0.927
LOC107097711	sptlc3	ENSCVAP00000010101	ENSCVAP00000006926	Serine palmitoyltransferase, long chain base subunit 2b.	Serine palmitoyltransferase, long chain base subunit 3.	0.901
LOC107097711	sptssa	ENSCVAP00000010101	ENSCVAP00000014917	Serine palmitoyltransferase, long chain base subunit 2b.	Serine palmitoyltransferase, small subunit A.	0.754
LOC107097711	sptssb	ENSCVAP00000010101	ENSCVAP00000003457	Serine palmitoyltransferase, long chain base subunit 2b.	Serine palmitoyltransferase, small subunit B.	0.611
LOC107103244	ENSCVAP00000014659	ENSCVAP00000003465	ENSCVAP00000014659	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Uncharacterized protein.	0.594
LOC107103244	LOC107087501	ENSCVAP00000003465	ENSCVAP00000027521	ORM1-like protein; Negative regulator of sphingolipid synthesis.	5-aminolevulinate synthase.	0.452
LOC107103244	LOC107097711	ENSCVAP00000003465	ENSCVAP00000010101	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Serine palmitoyltransferase, long chain base subunit 2b.	0.594
LOC107103244	gcat	ENSCVAP00000003465	ENSCVAP00000001179	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Glycine C-acetyltransferase.	0.452
LOC107103244	ism1	ENSCVAP00000003465	ENSCVAP00000006978	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Isthmin 1.	0.594
LOC107103244	ism2	ENSCVAP00000003465	ENSCVAP00000010150	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Isthmin 2b.	0.594
LOC107103244	sptlc1	ENSCVAP00000003465	ENSCVAP00000012135	ORM1-like protein; Negative regulator of sphingolipid synthesis.	Serine palmitoyltransferase, long chain base subunit 1.	0.846