STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107088954Alpha-methylacyl-CoA racemase. (242 aa)    
Predicted Functional Partners:
ENSCVAP00000028390
Uncharacterized protein.
  
  
  0.943
hsdl2
Hydroxysteroid dehydrogenase like 2.
  
 0.933
scp2
Uncharacterized protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 
 0.810
iyd
Iodotyrosine deiodinase.
   
 
 0.782
sdha
Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).
  
 
 0.772
ENSCVAP00000022485
Sterol carrier protein 2b.
  
 
 0.752
rfk
Riboflavin kinase.
   
 
  0.748
ilvbl
IlvB (bacterial acetolactate synthase)-like; Belongs to the TPP enzyme family.
  
 
 0.724
hacl1
2-hydroxyacyl-CoA lyase 1; Belongs to the TPP enzyme family.
  
 
 0.724
ehhadh
Enoyl-CoA, hydratase/3-hydroxyacyl CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.633
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.