STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfecTranscription factor EC. (395 aa)    
Predicted Functional Partners:
LOC107086851
Endothelin receptor Ba; Belongs to the G-protein coupled receptor 1 family.
     
 0.675
fbxw5
F-box and WD repeat domain containing 5.
      
 0.662
tfap2b
Transcription factor AP-2 beta.
      
 0.567
tfap2a
Transcription factor AP-2 alpha.
      
 0.567
LOC107090011
Interferon regulatory factor 4a.
   
 
 0.547
H2AZ1
Histone H2A; Belongs to the histone H2A family.
    
 
 0.523
aprt
Adenine phosphoribosyltransferase.
   
  
 0.521
LOC107088716
Si:ch211-243g18.2; Belongs to the intermediate filament family.
      
 0.497
LOC107083373
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
      
 0.493
pak4
Non-specific serine/threonine protein kinase.
      
 0.485
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.