STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000003563Si:dkey-240h12.4. (154 aa)    
Predicted Functional Partners:
becn1
Beclin 1, autophagy related.
   
 0.917
fundc1
FUN14 domain containing 1.
      
 0.637
calm1
Calmodulin 2a (phosphorylase kinase, delta); Belongs to the calmodulin family.
   
 0.613
LOC107084023
Calmodulin.
   
 0.613
LOC107094827
Calmodulin.
   
 0.613
LOC107094180
Calmodulin.
   
 0.613
LOC107091989
Receptor-interacting serine-threonine kinase 3.
  
 
 0.565
LOC107086723
Mitogen-activated protein kinase.
  
 
 0.553
LOC107088576
Mitogen-activated protein kinase.
  
 
 0.544
LOC107101279
Mitogen-activated protein kinase 11.
  
 
 0.513
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.