STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtn4Reticulon. (813 aa)    
Predicted Functional Partners:
ENSCVAP00000012080
Vesicle (multivesicular body) trafficking 1.
    
   0.555
LOC107092801
Nerve growth factor receptor a (TNFR superfamily, member 16).
     
 0.511
stx5
Syntaxin 5A; Belongs to the syntaxin family.
      
 0.509
rtn4r
Reticulon 4 receptor.
    
 0.495
nus1
NUS1 dehydrodolichyl diphosphate synthase subunit.
    
 
 0.494
LOC107085523
GTP cyclohydrolase 2.
    
   0.487
LOC107083844
GTP cyclohydrolase 1.
    
   0.487
snx15
Sorting nexin 15.
    
   0.481
ENSCVAP00000014461
Uncharacterized protein.
    
 0.469
Omg
Oligodendrocyte myelin glycoprotein b.
    
 0.469
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.