STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
svipSi:ch73-147o17.1. (110 aa)    
Predicted Functional Partners:
ubxn2a
UBX domain protein 2A.
     
 0.959
LOC107094393
Zgc:136908; Belongs to the AAA ATPase family.
    
 0.945
vcp
Valosin containing protein; Belongs to the AAA ATPase family.
    
 0.945
ubxn1
UBX domain protein 1.
     
 0.924
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 0.919
ubxn6
UBX domain protein 6.
    
 0.910
UBXN4
UBX domain protein 4.
     
 0.907
LOC107097974
Uncharacterized protein.
      
 0.665
Glrx3
Glutaredoxin 3.
      
 0.639
LOC107096309
Zgc:174935.
      
 0.558
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.