STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prelpProline/arginine-rich end leucine-rich repeat protein. (379 aa)    
Predicted Functional Partners:
ogn
Osteoglycin, paralog a.
   
 
0.723
LOC107101834
Lumican.
  
 
0.707
lrr1
Zgc:77287.
  
   
0.639
LOC107101822
Keratocan.
  
  
 
0.624
LOC107103066
Asporin.
  
 
0.618
adgrl2
Adhesion G protein-coupled receptor L2a; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.617
LOC107090026
Si:ch1073-186i23.1; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.617
adgrl1
Adhesion G protein-coupled receptor L1a; Belongs to the G-protein coupled receptor 2 family.
    
 
 0.617
bgn
Biglycan; May be involved in collagen fiber assembly. Belongs to the small leucine-rich proteoglycan (SLRP) family. SLRP class I subfamily.
  
 
0.616
LOC107101486
Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.
    
   0.611
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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