STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107102047Ankyrin repeat and SOCS box-containing 12b. (318 aa)    
Predicted Functional Partners:
commd8
COMM domain containing 8.
   
  0.644
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.640
commd1
Copper metabolism (Murr1) domain containing 1.
    
  0.636
Commd4
COMM domain containing 4.
    
 0.634
ENSCVAP00000009468
COMM domain containing 9.
    
  0.623
commd2
COMM domain containing 2.
    
  0.623
commd6
COMM domain containing 6.
    
  0.622
commd7
COMM domain containing 7.
    
  0.622
COMMD10
COMM domain containing 10.
    
  0.621
ccdc22
Coiled-coil domain containing 22.
    
  0.616
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.