STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crbnCereblon. (446 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 
 0.935
LOC107094197
Si:ch211-113e8.10.
    
 
 0.886
csnk1a1
Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.
    
 
 0.799
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 
 0.799
cul4a
Cullin 4A; Belongs to the cullin family.
    
 
 0.748
cul4b
Cullin 4B; Belongs to the cullin family.
    
 
 0.736
LOC107085468
Uncharacterized protein.
    
 
 0.695
ikzf1
IKAROS family zinc finger 1 (Ikaros).
    
 
 0.645
sall4
Spalt-like transcription factor 4.
    
 
 0.635
cops5
COP9 signalosome subunit 5.
    
 
 0.568
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.