STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arhgef9Cdc42 guanine nucleotide exchange factor (GEF) 9b. (1255 aa)    
Predicted Functional Partners:
CDC42
Cell division cycle 42.
    
 0.704
LOC107085118
Uncharacterized protein.
    
 0.704
rtn4rl2
Reticulon 4 receptor-like 2 a.
    
 
 0.674
LOC107087433
Si:ch211-120g10.1.
   
  
 0.669
LOC107102750
3-hydroxy-3-methylglutaryl coenzyme A synthase; This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.
      
 0.667
LOC107082256
Uncharacterized protein.
    
 0.624
LOC107086129
Uncharacterized protein.
    
 0.624
gabra2
Gamma-aminobutyric acid type A receptor alpha2 subunit a; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
 
 0.534
LOC107090147
Uncharacterized protein; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
 
 0.534
rac2
Uncharacterized protein.
    
 0.533
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (14%) [HD]