doc2b protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

doc2b

Double C2-like domain-containing protein. (381 aa)

Predicted Functional Partners:

Rph3a

0.857

LOC107095688

0.410

ENSCVAP00000004593

0.410

rab3c

0.410

rab3d

0.410

LOC107100514

0.410

rab3a

0.410

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCVAP00000004593	Rph3a	ENSCVAP00000004593	ENSCVAP00000015338	Uncharacterized protein.	Uncharacterized protein.	0.410
ENSCVAP00000004593	doc2b	ENSCVAP00000004593	ENSCVAP00000003739	Uncharacterized protein.	Double C2-like domain-containing protein.	0.410
LOC107095688	Rph3a	ENSCVAP00000002599	ENSCVAP00000015338	Uncharacterized protein.	Uncharacterized protein.	0.410
LOC107095688	doc2b	ENSCVAP00000002599	ENSCVAP00000003739	Uncharacterized protein.	Double C2-like domain-containing protein.	0.410
LOC107100514	Rph3a	ENSCVAP00000014626	ENSCVAP00000015338	RAB3B, member RAS oncogene family.	Uncharacterized protein.	0.410
LOC107100514	doc2b	ENSCVAP00000014626	ENSCVAP00000003739	RAB3B, member RAS oncogene family.	Double C2-like domain-containing protein.	0.410
Rph3a	ENSCVAP00000004593	ENSCVAP00000015338	ENSCVAP00000004593	Uncharacterized protein.	Uncharacterized protein.	0.410
Rph3a	LOC107095688	ENSCVAP00000015338	ENSCVAP00000002599	Uncharacterized protein.	Uncharacterized protein.	0.410
Rph3a	LOC107100514	ENSCVAP00000015338	ENSCVAP00000014626	Uncharacterized protein.	RAB3B, member RAS oncogene family.	0.410
Rph3a	doc2b	ENSCVAP00000015338	ENSCVAP00000003739	Uncharacterized protein.	Double C2-like domain-containing protein.	0.857
Rph3a	rab3a	ENSCVAP00000015338	ENSCVAP00000025657	Uncharacterized protein.	RAB3A, member RAS oncogene family, b.	0.410
Rph3a	rab3c	ENSCVAP00000015338	ENSCVAP00000009296	Uncharacterized protein.	RAB3C, member RAS oncogene family.	0.410
Rph3a	rab3d	ENSCVAP00000015338	ENSCVAP00000011574	Uncharacterized protein.	RAB3D, member RAS oncogene family, b.	0.410
doc2b	ENSCVAP00000004593	ENSCVAP00000003739	ENSCVAP00000004593	Double C2-like domain-containing protein.	Uncharacterized protein.	0.410
doc2b	LOC107095688	ENSCVAP00000003739	ENSCVAP00000002599	Double C2-like domain-containing protein.	Uncharacterized protein.	0.410
doc2b	LOC107100514	ENSCVAP00000003739	ENSCVAP00000014626	Double C2-like domain-containing protein.	RAB3B, member RAS oncogene family.	0.410
doc2b	Rph3a	ENSCVAP00000003739	ENSCVAP00000015338	Double C2-like domain-containing protein.	Uncharacterized protein.	0.857
doc2b	rab3a	ENSCVAP00000003739	ENSCVAP00000025657	Double C2-like domain-containing protein.	RAB3A, member RAS oncogene family, b.	0.410
doc2b	rab3c	ENSCVAP00000003739	ENSCVAP00000009296	Double C2-like domain-containing protein.	RAB3C, member RAS oncogene family.	0.410
doc2b	rab3d	ENSCVAP00000003739	ENSCVAP00000011574	Double C2-like domain-containing protein.	RAB3D, member RAS oncogene family, b.	0.410