STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCVAP00000003748Ig-like domain-containing protein; Belongs to the MHC class I family. (349 aa)    
Predicted Functional Partners:
cd8a
Uncharacterized protein.
    
 0.670
ENSCVAP00000006253
Uncharacterized protein.
    
  0.551
LOC107103224
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.540
rpa2
Replication protein A2.
   
 0.540
ENSCVAP00000016466
Uncharacterized protein.
   
 0.540
LOC107098553
Beta-2-microglobulin; Component of the class I major histocompatibility complex (MHC). Involved in the presentation of peptide antigens to the immune system.
   
 0.540
LOC107086734
TAP binding protein (tapasin), tandem duplicate 2.
   
 0.499
stn1
STN1 subunit of CST complex.
   
 0.464
ENSCVAP00000023689
SAS-6 centriolar assembly protein.
   
 0.464
cd247
Uncharacterized protein.
    
 0.428
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.