STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107100899Stearoyl-CoA desaturase; Belongs to the fatty acid desaturase type 1 family. (342 aa)    
Predicted Functional Partners:
LOC107098787
Stearoyl-CoA desaturase b; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
  
 
0.901
ENSCVAP00000010652
Cytochrome b5 heme-binding domain-containing protein; Belongs to the cytochrome b5 family.
   
 
 0.685
acaca
Acetyl-CoA carboxylase alpha.
   
  
 0.592
LOC107100048
Acetyl-CoA carboxylase beta.
   
  
 0.592
LOC107104039
Carrier domain-containing protein.
   
 
 0.522
fasn
Coiled-coil domain containing 57.
   
 
 0.522
LOC107104718
Si:dkey-61p9.11.
   
 
 0.522
LOC107104719
Carrier domain-containing protein.
   
 
 0.522
ENSCVAP00000005569
Protein-serine/threonine kinase.
     
 0.513
bckdha
2-oxoisovalerate dehydrogenase subunit alpha; The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
      
 0.509
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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