STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107099681Uncharacterized protein. (558 aa)    
Predicted Functional Partners:
LOC107088738
Solute carrier family 11 member 2.
  
  
 
0.901
SLC11A2
Solute carrier family 11 member 2.
  
  
 
0.900
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
  
 0.523
noc3l
Nucleolar complex protein 3 homolog.
      
 0.479
Slc25a51
Solute carrier family 25 member 51b; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.479
slc30a9
Solute carrier family 30 member 9.
   
 
 0.472
LOC107101691
Nedd4 family interacting protein 2.
   
 
 0.467
LOC107102039
Nedd4 family interacting protein 1, like.
   
 
 0.467
NDFIP1
Nedd4 family interacting protein 1.
   
 
 0.467
ccs
Copper chaperone for superoxide dismutase.
     
 0.431
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.