STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsd1Nuclear receptor binding SET domain protein 1b. (2513 aa)    
Predicted Functional Partners:
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
    
 0.686
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
    
 0.686
plod1
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a.
    
 0.686
Camkmt
Si:ch73-54n14.2.
     
 0.677
eed
Embryonic ectoderm development.
   
 0.619
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.611
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.568
rad50
RAD50 homolog, double strand break repair protein.
   
 0.567
bard1
BRCA1 associated RING domain 1.
   
 0.555
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.553
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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