STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nsd2Nuclear receptor binding SET domain protein 2. (1456 aa)    
Predicted Functional Partners:
mre11
Double-strand break repair protein; Involved in DNA double-strand break repair (DSBR). Possesses single-strand endonuclease activity and double-strand-specific 3'-5' exonuclease activity. Also involved in meiotic DSB processing.
   
 0.727
tp53bp1
Tumor protein p53 binding protein, 1.
    
 0.721
rad50
RAD50 homolog, double strand break repair protein.
   
 0.696
ENSCVAP00000003314
Histone H2B; Belongs to the histone H2B family.
    
 0.688
ENSCVAP00000012726
Histone H2B; Belongs to the histone H2B family.
    
 0.688
LOC107101698
Histone H2B; Belongs to the histone H2B family.
    
 0.688
ENSCVAP00000017263
Histone H2B; Belongs to the histone H2B family.
    
 0.688
LOC107096240
Histone H2B; Belongs to the histone H2B family.
    
 0.688
plod3
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3.
    
 0.678
plod2
Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 2.
    
 0.678
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.