STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpl23aRibosomal protein L23a; Belongs to the universal ribosomal protein uL23 family. (166 aa)    
Predicted Functional Partners:
rps26
40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family.
   
 
 0.999
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.999
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 
 0.999
mrpl32
Mitochondrial ribosomal protein L32.
  
 
 0.999
Mrps6
Mitochondrial ribosomal protein S6.
  
 
 0.999
RPS29
Ribosomal protein S29.
  
 0.999
rps27a
Ribosomal protein S27a.
   
 0.999
rpl39
Ribosomal protein L39.
   
 0.999
rpl4
Ribosomal protein L4.
  
 0.999
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 0.999
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.