STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107095145Zgc:66440. (369 aa)    
Predicted Functional Partners:
LOC107098104
Notch receptor 1b.
    
 0.713
notch1
Notch receptor 1a.
    
 0.713
LOC107089721
Notch receptor 2.
    
 0.685
LOC107083079
Notch receptor 3.
    
 0.683
LOC107082639
Hairy-related 13.
    
 
 0.548
LOC107082597
Poly [ADP-ribose] polymerase.
   
 
 0.547
LOC107091926
Uncharacterized protein.
    
 
 0.536
LOC107082629
Uncharacterized protein.
   
 
 0.527
ENSCVAP00000006833
Uncharacterized protein.
   
 
 0.527
LOC107097141
Family with sequence similarity 162 member A.
   
 
 0.527
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.