STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddx52DEAD (Asp-Glu-Ala-Asp) box polypeptide 52. (588 aa)    
Predicted Functional Partners:
utp3
UTP3 small subunit processome component.
   
 0.999
pdcd11
Programmed cell death 11.
   
 0.994
nol6
Nucleolar protein 6.
   
 0.993
nop14
NOP14 nucleolar protein homolog (yeast).
   
 
 0.992
dcaf13
Ddb1 and cul4 associated factor 13.
   
 0.986
Ddx47
DEAD (Asp-Glu-Ala-Asp) box polypeptide 47.
  
0.982
wdr46
WD repeat domain 46.
   
 
 0.982
utp20
UTP20 small subunit processome component.
   
 
 0.977
ddx49
DEAD (Asp-Glu-Ala-Asp) box polypeptide 49; Belongs to the DEAD box helicase family.
  
0.977
fcf1
FCF1 rRNA-processing protein.
   
 0.970
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.