STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107097203T-box transcription factor 6. (480 aa)    
Predicted Functional Partners:
msgn1
Mesogenin 1.
   
 0.704
col9a1
Collagen, type IX, alpha 1b.
      
 0.668
ENSCVAP00000013353
Mesoderm posterior aa.
    
 0.657
sfrp5
Secreted frizzled-related protein 5.
      
 0.635
LOC107101621
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
    
 0.546
LOC107080995
Inhibin subunit beta Ab.
     
 0.519
lemd3
LEM domain containing 3.
    
 
 0.516
grk6
G protein-coupled receptor kinase; Belongs to the protein kinase superfamily. AGC Ser/Thr protein kinase family. GPRK subfamily.
      
 0.512
LOC107082385
Hairy-related 11.
      
 0.506
meox1
Mesenchyme homeobox 1.
    
 
 0.498
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.