STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sgpl1Sphingosine-1-phosphate lyase 1. (565 aa)    
Predicted Functional Partners:
LOC107082722
Si:ch211-212g7.6.
    
 0.977
sphk2
Sphingosine kinase 2.
  
 0.967
LOC107088081
DAGKc domain-containing protein.
  
 0.967
plpp2
Phospholipid phosphatase 2a.
    
 0.958
LOC107085726
Phospholipid phosphatase 2b.
    
 0.931
LOC107086274
acidPPc domain-containing protein.
    
 0.926
plpp1
Phospholipid phosphatase 1a.
    
 0.926
LOC107093428
Phosphatidic acid phosphatase type 2D.
    
 0.923
LOC107101481
acidPPc domain-containing protein.
    
 0.923
LOC107094059
Phospholipid phosphatase 3.
    
 0.922
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.