STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107096136Uncharacterized protein. (249 aa)    
Predicted Functional Partners:
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 
 0.627
LOC107102619
Histone H2A; Belongs to the histone H2A family.
   
 
 0.627
LOC107083999
Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.
   
 0.619
LOC107093938
Uncharacterized protein; Belongs to the nucleosome assembly protein (NAP) family.
   
 0.619
LOC107086783
Testis specific protein Y-linked; Belongs to the nucleosome assembly protein (NAP) family.
   
 0.586
xpo1
Exportin 1 (CRM1 homolog, yeast) a.
   
 0.540
LOC107081758
Exportin 1 (CRM1 homolog, yeast) b.
   
 0.540
ENSCVAP00000015390
Uncharacterized protein.
     
 0.514
LOC107091963
ELAV-like protein; Belongs to the RRM elav family.
   
 0.469
LOC107093008
ELAV-like protein; Belongs to the RRM elav family.
   
 0.469
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.