STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smg8SMG8 nonsense mediated mRNA decay factor. (921 aa)    
Predicted Functional Partners:
smg9
SMG9 nonsense mediated mRNA decay factor.
    
 0.999
Smg1
FATC domain-containing protein.
   
 0.963
ENSCVAP00000021922
Uncharacterized protein.
   
 0.963
smg6
SMG6 nonsense mediated mRNA decay factor.
     
 0.863
smg5
SMG5 nonsense mediated mRNA decay factor.
     
 0.863
smg7
SMG7 nonsense mediated mRNA decay factor.
     
 0.859
mtor
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
   
 0.831
prkdc
Protein kinase, DNA-activated, catalytic subunit; Belongs to the PI3/PI4-kinase family.
   
 0.829
dcp1a
Decapping mRNA 1A.
   
 
 0.829
LOC107084966
Proline-rich nuclear receptor coactivator 2.
     
 0.778
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.