STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107096835Uncharacterized protein. (749 aa)    
Predicted Functional Partners:
RIPK2
Receptor interacting serine/threonine kinase 2.
   
 0.831
aamp
Angio-associated, migratory cell protein.
     
 0.607
rps27a
Ribosomal protein S27a.
    
  0.571
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
   
  0.554
card9
CARD domain-containing protein.
  
 
 0.551
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.543
casp9
Caspase 9, apoptosis-related cysteine peptidase; Belongs to the peptidase C14A family.
    
 0.491
tab1
TGF-beta activated kinase 1/MAP3K7 binding protein 1.
   
 0.455
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.429
irak1
Interleukin-1 receptor-associated kinase 1.
   
 0.420
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.