mpp2 protein (Cyprinodon variegatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mpp2

Membrane protein, palmitoylated 2b (MAGUK p55 subfamily member 2); Belongs to the MAGUK family. (567 aa)

Predicted Functional Partners:

LOC107091323

0.683

LOC107100323

0.683

LOC107090842

0.683

lin7a

0.683

LOC107083726

0.618

LOC107087392

0.618

APBA1

0.618

LOC107091034

0.618

LOC107096970

0.618

LOC107105123

0.553

Your Current Organism:

Cyprinodon variegatus

NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APBA1	LOC107090842	ENSCVAP00000014206	ENSCVAP00000028713	Amyloid beta precursor protein binding family A member 1.	Lin-7 homolog C (C. elegans).	0.561
APBA1	LOC107091323	ENSCVAP00000014206	ENSCVAP00000013498	Amyloid beta precursor protein binding family A member 1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
APBA1	LOC107100323	ENSCVAP00000014206	ENSCVAP00000021677	Amyloid beta precursor protein binding family A member 1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
APBA1	lin7a	ENSCVAP00000014206	ENSCVAP00000028998	Amyloid beta precursor protein binding family A member 1.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
APBA1	mpp2	ENSCVAP00000014206	ENSCVAP00000004102	Amyloid beta precursor protein binding family A member 1.	Membrane protein, palmitoylated 2b (MAGUK p55 subfamily member 2); Belongs to the MAGUK family.	0.618
LOC107083726	LOC107090842	ENSCVAP00000008734	ENSCVAP00000028713	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Lin-7 homolog C (C. elegans).	0.561
LOC107083726	LOC107091323	ENSCVAP00000008734	ENSCVAP00000013498	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
LOC107083726	LOC107100323	ENSCVAP00000008734	ENSCVAP00000021677	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
LOC107083726	lin7a	ENSCVAP00000008734	ENSCVAP00000028998	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
LOC107083726	mpp2	ENSCVAP00000008734	ENSCVAP00000004102	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	Membrane protein, palmitoylated 2b (MAGUK p55 subfamily member 2); Belongs to the MAGUK family.	0.618
LOC107087392	LOC107090842	ENSCVAP00000013222	ENSCVAP00000028713	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Lin-7 homolog C (C. elegans).	0.561
LOC107087392	LOC107091323	ENSCVAP00000013222	ENSCVAP00000013498	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
LOC107087392	LOC107100323	ENSCVAP00000013222	ENSCVAP00000021677	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
LOC107087392	lin7a	ENSCVAP00000013222	ENSCVAP00000028998	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Protein lin-7 homolog; Plays a role in establishing and maintaining the asymmetric distribution of channels and receptors at the plasma membrane of polarized cells; Belongs to the lin-7 family.	0.561
LOC107087392	mpp2	ENSCVAP00000013222	ENSCVAP00000004102	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	Membrane protein, palmitoylated 2b (MAGUK p55 subfamily member 2); Belongs to the MAGUK family.	0.618
LOC107090842	APBA1	ENSCVAP00000028713	ENSCVAP00000014206	Lin-7 homolog C (C. elegans).	Amyloid beta precursor protein binding family A member 1.	0.561
LOC107090842	LOC107083726	ENSCVAP00000028713	ENSCVAP00000008734	Lin-7 homolog C (C. elegans).	Amyloid beta (A4) precursor protein-binding, family A, member 1b.	0.561
LOC107090842	LOC107087392	ENSCVAP00000028713	ENSCVAP00000013222	Lin-7 homolog C (C. elegans).	Amyloid beta (A4) precursor protein-binding, family A, member 2a.	0.561
LOC107090842	LOC107091034	ENSCVAP00000028713	ENSCVAP00000014836	Lin-7 homolog C (C. elegans).	Amyloid beta (A4) precursor protein-binding, family A, member 2b.	0.561
LOC107090842	LOC107096970	ENSCVAP00000028713	ENSCVAP00000015505	Lin-7 homolog C (C. elegans).	Amyloid beta precursor protein binding family A member 3.	0.561