STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uhmk1U2AF homology motif (UHM) kinase 1. (432 aa)    
Predicted Functional Partners:
uap1
UDP-N-acetylglucosamine pyrophosphorylase 1.
 
    
 0.709
LOC107098265
Stathmin; Belongs to the stathmin family.
    
 
 0.616
styxl1
Serine/threonine/tyrosine interacting-like 1.
      
 0.556
gne
Glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase.
      
 0.542
LOC107102593
Cyclin-dependent kinase inhibitor 1Cb.
   
 0.528
LOC107099562
Cyclin-dependent kinase inhibitor 1D.
   
 0.528
cdkn1b
Cyclin-dependent kinase inhibitor 1Bb.
   
 0.528
LOC107085617
Cyclin-dependent kinase inhibitor 1A.
   
 0.528
prpf40a
PRP40 pre-mRNA processing factor 40 homolog A.
    
 0.506
LOC107099560
Uncharacterized protein.
   
 0.505
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.