STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107101506Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle. (292 aa)    
Predicted Functional Partners:
asph
Un-named hu7910.
   
 
 0.938
Ryr2
Ion_trans domain-containing protein.
   
 0.921
ENSCVAP00000017505
Asp-B-Hydro_N domain-containing protein.
    
  0.908
LOC107098913
Asp-B-Hydro_N domain-containing protein.
     
  0.905
LOC107087732
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
  
  
 
0.901
CASQ2
Calsequestrin; Calsequestrin is a high-capacity, moderate affinity, calcium- binding protein and thus acts as an internal calcium store in muscle.
  
  
 
0.901
LOC107089817
Ryanodine receptor 1a (skeletal).
   
 0.723
RYR3
Ryanodine receptor 3.
   
 0.723
LOC107093662
Ryanodine receptor 3.
   
 0.723
ENSCVAP00000025068
Uncharacterized protein.
    
  0.669
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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