STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107089377Uncharacterized protein. (247 aa)    
Predicted Functional Partners:
srsf10
Serine and arginine rich splicing factor 10.
   
 0.964
nxf1
Zgc:153681.
   
 0.963
eif4a3
Eukaryotic translation initiation factor 4A3; Belongs to the DEAD box helicase family.
  
 0.950
rbm8a
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
   
 0.947
srsf2
Serine and arginine rich splicing factor 2a.
  
0.928
LOC107092507
Serine and arginine rich splicing factor 7a.
   
0.919
srsf7
Serine and arginine rich splicing factor 7b.
   
0.919
SRSF3
Serine and arginine rich splicing factor 3.
   
0.904
LOC107101924
RRM domain-containing protein.
   
0.904
magoh
Mago homolog, exon junction complex subunit.
   
 0.893
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.