STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107092301Family with sequence similarity 102 member Ba. (371 aa)    
Predicted Functional Partners:
sec61g
SEC61 translocon gamma subunit.
   
 
 0.627
Pin1
Peptidyl-prolyl cis-trans isomerase.
    
 0.454
LOC107084967
Phosphatidylinositol 4-kinase beta; Belongs to the PI3/PI4-kinase family.
   
 0.436
pi4kb
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
   
 0.436
ENSCVAP00000000097
Uncharacterized protein.
    
 
 0.422
LOC107089206
Uncharacterized protein.
    
 
 0.422
gpsm2
Uncharacterized protein.
    
 
 0.422
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
  
 0.405
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
  
 0.405
rpl32
Ribosomal protein L32.
  
    0.404
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.