STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107084518Sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D; Belongs to the semaphorin family. (970 aa)    
Predicted Functional Partners:
nrp1
Neuropilin; Belongs to the neuropilin family.
    
 0.627
mst1r
Macrophage stimulating 1 receptor b.
    
 0.610
met
MET proto-oncogene, receptor tyrosine kinase.
    
 0.610
LOC107097508
Macrophage stimulating 1 receptor a.
    
 0.610
ENSCVAP00000020957
Plexin_cytopl domain-containing protein.
    
 0.484
cdk5
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
     
 0.434
plxna1
Plexin A1.
    
 0.431
LOC107100197
Sema domain-containing protein.
    
 0.431
LOC107095492
Plexin A4.
    
 0.431
LOC107091891
Plexin A2.
    
 0.431
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.