STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ogfod12-oxoglutarate and iron-dependent oxygenase domain containing 1. (410 aa)    
Predicted Functional Partners:
sycp3
Synaptonemal complex protein 3.
   
 
 0.853
tufm
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
   
   0.673
cpox
Coproporphyrinogen oxidase.
   
  
 0.617
tsr1
TSR1 ribosome maturation factor.
   
    0.518
etf1
Eukaryotic translation termination factor 1b.
   
 
 0.495
polr3a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
    0.493
abcf2
ATP-binding cassette, sub-family F (GCN20), member 2b.
   
   0.492
bms1
BMS1 ribosome biogenesis factor.
   
    0.487
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
    
 
 0.481
trmt1
tRNA (guanine(26)-N(2))-dimethyltransferase.
   
 
 0.476
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.