Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ogfod12-oxoglutarate and iron-dependent oxygenase domain containing 1. (410 aa)    
Predicted Functional Partners:
sycp3
Synaptonemal complex protein 3.
   
 
 0.888
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
   
 0.861
cpox
Coproporphyrinogen oxidase.
   
  
 0.663
jmjd4
Jumonji domain containing 4.
      
 0.605
abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
   
   0.590
srebf2
Sterol regulatory element binding transcription factor 2.
   
 
 0.580
srebf1
Sterol regulatory element binding transcription factor 1.
   
 
 0.580
LOC107103895
Phosphoenolpyruvate carboxykinase 2 (mitochondrial).
     
 0.575
mrps12
Mitochondrial ribosomal protein S12; Belongs to the universal ribosomal protein uS12 family.
   
 0.571
Gcn1
Uncharacterized protein.
   
 
 0.561
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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