Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC107088898Uncharacterized protein. (447 aa)    
Predicted Functional Partners:
rbck1
RanBP-type and C3HC4-type zinc finger containing 1.
    
  0.902
sharpin
SHANK-associated RH domain interacting protein.
    
  0.902
LOC107092260
Sharpin and rbck1 related.
    
  0.902
LOC107093889
Cylindromatosis (turban tumor syndrome), b.
     
  0.900
spata2
Spermatogenesis associated 2.
     
 
0.900
cyld
Cylindromatosis (turban tumor syndrome), a; Belongs to the peptidase C19 family.
     
  0.900
rnf31
Ring finger protein 31.
     
  0.900
LOC107091977
Uncharacterized protein.
     
  0.900
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.668
ranbp2
RAN binding protein 2.
    
 0.483
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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