STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zcchc2CCHC-type domain-containing protein. (1054 aa)    
Predicted Functional Partners:
relch
RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing.
    
 
 0.653
mtrex
Mtr4 exosome RNA helicase.
   
 
 0.637
LOC107091603
Uncharacterized protein.
    
 
 0.495
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
  
 0.463
LOC107084384
Uncharacterized protein.
   
 
 0.448
tent4b
Terminal nucleotidyltransferase 4B.
   
 
 0.448
tent4a
Terminal nucleotidyltransferase 4A.
   
 
 0.448
skiv2l
SKI2 homolog, superkiller viralicidic activity 2-like.
   
 
 0.428
nkapd1
Zgc:162339.
      
 0.407
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.