STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdpgp1GDP-D-glucose phosphorylase 1. (360 aa)    
Predicted Functional Partners:
Mrps6
Mitochondrial ribosomal protein S6.
    
 
 0.651
ggnbp2
Gametogenetin binding protein 2.
      
 0.650
amd1
S-adenosylmethionine decarboxylase proenzyme.
   
  
 0.598
uxs1
UDP-glucuronate decarboxylase 1.
     
 0.505
mrpl15
Mitochondrial ribosomal protein L15.
    
 
 0.490
mpi
Mannose phosphate isomerase.
      
 0.483
mrpl41
Mitochondrial ribosomal protein L41.
    
   0.483
dap3
Death associated protein 3.
    
   0.483
LOC107089462
Mitochondrial ribosomal protein L23.
    
   0.483
mrpl33
Uncharacterized protein.
    
   0.483
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.