STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fbxo28F-box protein 28. (366 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
   
 
 0.776
cul1
Cullin 1b; Belongs to the cullin family.
   
 
 0.713
KLHL28
Kelch like family member 28.
      
 0.603
cuedc2
CUE domain containing 2.
      
 0.586
fbxo9
F-box protein 9.
      
 0.552
fbxo4
F-box protein 4.
      
 0.551
impact
Impact RWD domain protein.
      
 0.551
dars2
Aspartyl-tRNA synthetase 2, mitochondrial.
      
 0.485
rnf166
Ring finger protein 166.
      
 0.483
LOC107099750
CULLIN_2 domain-containing protein; Belongs to the cullin family.
   
 
 0.472
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.