STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC107092307TRIF-NTD domain-containing protein. (563 aa)    
Predicted Functional Partners:
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.984
LOC107097205
Interferon regulatory factor 3.
    
 0.977
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.966
irf7
Interferon regulatory factor 7.
    
 0.952
tlr3
Toll-like receptor 3.
   
 0.951
irak4
Interleukin-1 receptor-associated kinase 4.
   
 0.935
tmed2
Transmembrane p24 trafficking protein 2.
   
 0.933
LOC107091989
Receptor-interacting serine-threonine kinase 3.
   
  0.928
tmed10
Transmembrane p24 trafficking protein 10.
   
 0.919
tmed9
Transmembrane p24 trafficking protein 9.
   
 0.819
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.