STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
criptCysteine-rich PDZ-binding protein. (101 aa)    
Predicted Functional Partners:
armc7
Armadillo repeat containing 7.
    
 
 0.867
phf5a
PHD finger protein 5A.
   
   0.799
sf3b1
Splicing factor 3b, subunit 1.
    
   0.794
rnf113a
Ring finger protein 113A.
    
   0.794
sf3b2
Splicing factor 3b, subunit 2.
    
   0.794
ENSCVAP00000025291
Uncharacterized protein.
    
   0.794
sf3b3
Splicing factor 3b, subunit 3.
    
   0.794
Prpf8
MPN domain-containing protein.
    
   0.665
dhx16
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
    
 
 0.629
rbm48
RNA binding motif protein 48.
   
 
 0.611
Your Current Organism:
Cyprinodon variegatus
NCBI taxonomy Id: 28743
Other names: C. variegatus, sheepshead minnow
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.